Detonate Download
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. This file is autogenerated. Don't edit it directly.DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the TruthEvaluationOverviewDETONATE (DE novo TranscriptOme rNa-seq Assembly with or without theTruth Evaluation) consists of two component packages, RSEM-EVAL andREF-EVAL. Both packages are mainly intended to be used to evaluate denovo transcriptome assemblies, although REF-EVAL can be used tocompare sets of any kinds of genomic sequences.RSEM-EVAL is a reference-free evaluation method based on a novelprobabilistic model that depends only on an assembly and the RNA-Seqreads used for its construction. Unlike N50, RSEM-EVAL combinesmultiple factors, including the compactness of an assembly and thesupport of the assembly from the RNA-Seq data, into a single,statistically-principled evaluation score. This score can be used toselect a best assembler, optimize an assembler's parameters, andguide new assembler design as an objective function.
In addition, foreach contig within an assembly, RSEM-EVAL provides a score thatassesses how well that contig is supported by the RNA-Seq data andcan be used to filter unnecessary contigs.REF-EVAL is a toolkit of reference-based measures, including contig,nucleotide, and pair precision, recall, and F1 scores, a novel kmercompression score, and several scores that compare induced kmerdistributions between the assembly and the reference. REF-EVAL alsoincludes a program to estimate the 'true' assembly of a set ofRNA-Seq reads, relative to a collection of full-length referencetranscripts.
See 1here, or ref-eval/README in the distribution, fordetailed information.DETONATE is motivated and described in detail in the following paper:Bo Li., Nathanael Fillmore., Yongsheng Bai, Mike Collins, James A.Thomson, Ron Stewart, and Colin N. Evaluation of de novotranscriptome assemblies from RNA-Seq data. Genome Biology 2014,15:553. 2link. = equal contributionsDownloadingThe current version of DETONATE (1.11) is available here:. 3detonate-1.11.tar.gzAs a convenience, we also provide a precompiled version, for Linux.This precompiled version may or may not work for you; if it doesn't,please try to compile the version above, instead.
Rune factory 2 rom download. 4detonate-1.11-precompiled.tar.gzBuilding/installationTo build RSEM-EVAL and REF-EVAL, simply type 'make' in the top-leveldetonate-1.11 directory, after you've upacked the tarball (tar xvfdetonate-1.11.tar.gz).
From the early nineties Wildebeest Games have created small independent titles for PC with a particular emphasis on physics based gameplay.All of the games on this site are free, simply download them, unzip them, and then run them - no DRM or protection whatsoever.There's a donate button on each games page - so if you've played one and enjoyed it, we'd be really grateful for any contributions.If you have any comments, suggestions or feedback in general we'd be glad to hear it, so please do drop us an email at this address. Please bear in mind that most of these titles are a few years old, so it's possible you might have some trouble running them on newer machines (you do run these games at your own risk).
With that said we've had all of them running on Windows 10 machines with no issues at all. Fire us an email through if you have bother and we'll try and have a look at it for you.More recently we have started to create newer versions of some of the games using unreal engine (Detonate and Vertigo for example). Progress is not as fast as we'd like due to other commitments but we do hope to have something to show you shortly.Finally - sincere thanks to all the kind people who have supported us over the past twenty years plus!